Publications

Full publication list

290 entries « 1 of 6 »

2024

1.

M. Devereux; E. D. Boittier; M. Meuwly

Systematic Improvement of Empirical Energy Functions in the Era of Machine Learning - IN PRINT Journal Article

In: J. Comp. Chem., 2024.

Links | BibTeX | Tags:

2.

K. P. Horn; L. I. Vázquez-Salazar; C. P. Koch; M. Meuwly

Improving Potential Energy Surfaces Using Measured Feshbach Resonance States Journal Article

In: Sci. Adv., vol. 10, pp. eadi6462, 2024.

Links | BibTeX | Tags:

3.

S. Käser; M. Meuwly

Numerical Accuracy Matters: Applications of Machine Learned Potential Energy Surfaces - IN PRINT Journal Article

In: J. Phys. Chem. Lett., 2024.

Links | BibTeX | Tags:

2023

4.

S. M. Salehi; M. Pezzella; A. Willard; M. Meuwly; M. Karplus

Water Dynamics around T0 vs R4 of Hemoglobin from Local Hydrophobicity Analysis, Invited Contribution Journal Article

In: J. Chem. Phys., vol. 158, pp. 025101, 2023.

Links | BibTeX | Tags:

5.

S. Käser; L. I. Vázquez-Salazar; M. Meuwly; K. Töpfer

Neural Network Potentials for Chemistry: Concepts, Applications and Prospects, Invited Contribution Journal Article

In: Digital Discovery, vol. 2, pp. 28-58, 2023.

Links | BibTeX | Tags:

6.

H. T. Turan; E. D. Boittier; M. Meuwly

Interaction at a Distance: Xenon Migration in Mb, Invited Contribution Journal Article

In: J. Chem. Phys., vol. 158, pp. 125103, 2023.

Links | BibTeX | Tags:

7.

H. T. Turan; M. Meuwly

Local Hydration Control and Functional Implications Through S-Nitrosylation of Proteins: Kirsten rat sarcoma virus (KRAS) and Hemoglobin (Hb) Journal Article

In: J. Phys. Chem. B, vol. 127, pp. 1526-1539, 2023.

Links | BibTeX | Tags:

8.

K. Töpfer; D. Koner; S. Erramilli; L. D. Ziegler; M. Meuwly

Molecular-Level Understanding of the Rovibrational Spectra of N2O in Gaseous, Supercritical, and Liquid SF6 and Xe, Invited Contribution Journal Article

In: J. Chem. Phys., vol. 158, pp. 144302, 2023.

Links | BibTeX | Tags:

9.

B. Margulis; K. P. Horn; D. M. Reich; M. Upadhyay; N. Kahn; A. Christianen; Ad van der Avoird; G. C. Groenenboom; C. P. Koch; M. Meuwly; E. Narevicius

Tomography of Feshbach Resonance States Journal Article

In: Science, vol. 380, pp. 77-81, 2023.

Links | BibTeX | Tags:

10.

S. Käser; M. Meuwly

Transfer-Learned Potential Energy Surfaces: Towards Microsecond-Scale Molecular Dynamics Simulations in the Gas Phase at CCSD(T) Quality Journal Article

In: J. Chem. Phys., vol. 158, pp. 214301, 2023, (Editor's Pick).

Links | BibTeX | Tags:

11.

A. Kilaj; S. Käser; J. Wang; P. Stranak; M. Schwilk; L. Xu; O. A. von Lilienfeld; J. Küpper; M. Meuwly; S. Willitsch

Conformational and State-Specific Effects in Reactions of 2,3-dibromobutadiene with Coulomb-Crystallized Calcium Ions Journal Article

In: PCCP, vol. 25, pp. 13933-13945, 2023.

Links | BibTeX | Tags:

12.

K. M. Hickson; J. C. San Vicente Veliz; D. Koner; M. Meuwly

Low-Temperature Kinetics for the N+NO Reaction: Experiment Guides the Way Journal Article

In: PCCP, vol. 25, pp. 13854-13863, 2023.

Links | BibTeX | Tags:

13.

K. Song; S. Käser; K. Töpfer; L. I. Vázquez-Salazar; M. Meuwly

PhysNet Meets CHARMM: A Framework for Routine Machine Learning/Molecular Mechanics Simulations Journal Article

In: J. Chem. Phys., vol. 159, pp. 024125, 2023.

Links | BibTeX | Tags:

14.

T. L. Fischer; M. Bödecker; S. M. Schweer; J. Dupont; V. Lepere; A. Zehnacker-Rentien; M. A. Suhm; B. Schröder; T. Henkes; D. M. Andrada; R. M. Balabin; H. K. Singh; H. P. Bhattacharyya; M. Sarma; S. Käser; K. Töpfer; L. I. Vázquez-Salazar; E. D. Boittier; M. Meuwly; G. Mandelli; C. Lanzi; R. Conte; M. Ceotto; F. Dietrich; V. Cisternas; R. Gnanasekaran; M. Hippler; M. Jarraya; M. Hochlaf; N. Viswanathan; T. Nevolianis; G. Rath; W. A. Kopp; K. Leonhard; R. A. Mata

The First HyDRA Challenge for Computational Vibrational Spectroscopy Journal Article

In: PCCP, vol. 25, pp. 22089-22102, 2023.

Links | BibTeX | Tags:

15.

A. Caracciolo; J. C. San Vicente Veliz; D. Lu; H. Guo; M. Meuwly; T. K. Minton

Experimental and Theoretical Studies of Hyperthermal N + O2 Collisions Journal Article

In: J. Phys. Chem. A, vol. 127, pp. 8834-8848, 2023.

Links | BibTeX | Tags:

16.

M. Upadhyay; K. Töpfer; M. Meuwly

Molecular Simulation for Atmospheric Reactions: Non-Equilibrium Dynamics, Roaming, and Glycolaldehyde Formation following Photoinduced Decomposition of syn-Acetaldehyde Oxide Journal Article

In: J. Phys. Chem. Lett., vol. 15, pp. 90-96, 2023.

Links | BibTeX | Tags:

17.

S. Goswami; S. Käser; R. J. Bemish; M. Meuwly

Effects of Aleatoric and Epistemic Errors in Reference Data on the Learnability and Quality of NN-Based Potential Energy Surfaces Journal Article

In: Artif. Intell. Chem., vol. 127, pp. 8834-8848, 2023.

Links | BibTeX | Tags:

2022

18.

S. M. Salehi; M. Meuwly

Cross Correlated Motions in Azidolysozyme Journal Article

In: Molecules, vol. 27(3), pp. 839, 2022.

BibTeX | Tags:

19.

S. M. Salehi; M. Meuwly

Site-Selective Dynamics of Ligand-Free and Ligand-Bound Azidolysozyme Journal Article

In: J. Chem. Phys., vol. 156, pp. 105105, 2022.

BibTeX | Tags:

20.

H. T. Turan; S. Brickel; M. Meuwly

Solvent Effects on the Menshutkin Reaction Journal Article

In: J. Phys. Chem. B, vol. 126, pp. 1951, 2022.

BibTeX | Tags:

21.

S. Patra; J. C. San Vicente Veliz; D. Koner; E. J. Bieske; M. Meuwly

Photodissociation Dynamics of N+3 Journal Article

In: J. Chem. Phys., vol. 156, pp. 124307, 2022.

BibTeX | Tags:

22.

M. Meuwly

Atomistic Simulations for Reactions and Vibrational Spectroscopy in the Era of Machine Learning - Quo Vadis? Journal Article

In: J. Phys. Chem. B, vol. 11, pp. 2155-2167, 2022.

BibTeX | Tags:

23.

R. Pokratat; D. Van den Eynden; S. Rudd Cooper; J. K. Mathiesen; V. Waser; M. Devereux; S. Billinge; M. Meuwly; K. M. O. Jensen; J. De Roo

Mechanistic Insight into the Precursor Chemistry of ZrO2 and HfO2 Nanocrystals; towards Size-Tunable Syntheses Journal Article

In: J. Am. Chem. Soc. Au, vol. 4, pp. 827838, 2022.

Links | BibTeX | Tags:

24.

M. Meuwly

Computational Vibrational Spectroscopy Journal Article

In: Chimia, vol. 76, pp. 589, 2022.

Links | BibTeX | Tags:

25.

K. Töpfer; M. Upadhyay; M. Meuwly

Quantitative Molecular Simulations, Invited Perspective Journal Article

In: PCCP, vol. 24, pp. 12767-12786, 2022.

Links | BibTeX | Tags:

26.

K. Töpfer; S. Käser; M. Meuwly

Double Proton Transfer in Hydrated Formic Acid Dimer: Interplay of Spatial Symmetry and Solvent-Generated Force on Reactivity Journal Article

In: PCCP, vol. 24, pp. 13869-13882, 2022.

Links | BibTeX | Tags:

27.

K. Töpfer; A. Pasti; A. Das; S. M. Salehi; L. I. Vázquez-Salazar; D. Rohrbach; T. Feurer; P. Hamm; M. Meuwly

Structure, Organization, and Heterogeneity of Water-Containing Deep Eutectic Solvents Journal Article

In: J. Am. Chem. Soc., vol. 144, pp. 14170-14180, 2022.

Links | BibTeX | Tags:

28.

S. Käser; M. Meuwly

Transfer Learned Potential Energy Surfaces: Accurate Anharmonic Vibrational Dynamics and Dissociation Energies for the Formic Acid Monomer and Dimer (vol 24, pg 5269, 2022) Journal Article

In: PCCP, vol. 24, pp. 17899-17899, 2022.

BibTeX | Tags:

29.

S. Goswami; J. C. San Vicente Veliz; M. Upadhyay; R. J. Bemish; M. Meuwly

Quantum and Quasi-classical Dynamics of the C(3P) + O2(3∑-g )->CO(1∑+)+ O(1D) Reaction on Its Electronic Ground State, Hot Article Journal Article

In: PCCP, vol. 24, pp. 23309-23322, 2022.

Links | BibTeX | Tags:

30.

S. Käser; M. Meuwly

Transfer Learned Potential Energy Surfaces: Accurate Anharmonic Vibrational Dynamics and Dissociation Energies for the Formic Acid Monomer and Dimer Journal Article

In: PCCP, vol. 24, pp. 5269, 2022.

BibTeX | Tags: Dissociation Energies, Formic Acid Dimer, potential energy surfaces, Vibrational Dynamics

31.

S. M. Salehi; S. Käser; K. Töpfer; P. Diamantis; R. Pfister; P. Hamm; U. Roethlisberger; M. Meuwly

Hydration Dynamics and IR Spectroscopy of 4-Fluorophenol Journal Article

In: PCCP, vol. 24, pp. 26046-26060, 2022.

Links | BibTeX | Tags:

32.

L. I. Vázquez-Salazar; E. D. Boittier; M. Meuwly

Uncertainty Quantification for Predictions of Atomistic Neural Networks Journal Article

In: Chem. Sci., vol. 13, pp. 13068-13084, 2022.

Links | BibTeX | Tags:

33.

S. Käser; J. O. Richardson; M. Meuwly

Transfer Learning for Affordable and High Quality Tunneling Splittings from Instanton Calculations Journal Article

In: J. Chem. Theo. Comput., vol. 18, pp. 6840-6850, 2022.

Links | BibTeX | Tags:

34.

J. C. San Vicente Veliz; J. Arnold; R. J. Bemish; M. Meuwly

Combining Machine Learning and Spectroscopy to Model Reactive Atom + Diatom Collisions, Invited Contribution Journal Article

In: J. Phys. Chem. A, vol. 126, pp. 7971-7980, 2022.

Links | BibTeX | Tags:

35.

E. D. Boittier; M. Devereux; M. Meuwly

Molecular Dynamics with Conformationally Dependent, Distributed Charges Journal Article

In: J. Chem. Theo. Comput., vol. 18, pp. 7544-7554, 2022.

Links | BibTeX | Tags:

2021

36.

M. Meuwly

Machine Learning for Chemical Reactions Journal Article

In: Chem. Review, vol. 121, pp. 10218, 2021.

BibTeX | Tags: machine learning

37.

L. I. Vázquez-Salazar; E. D. Boittier; O. T. Unke; M. Meuwly

Impact of the Characteristics of Quantum Chemical Databases on Machine Learning Predictions of Tautomerization Energies Journal Article

In: J. Chem. Theo. Comput., vol. 17, pp. 3687, 2021.

Links | BibTeX | Tags: machine learning, Quantum Chemistry, Tautomerization Energies

38.

M. Upadhyay; M. Pezzella; M. Meuwly

Genesis of Polyatomic Molecules in Dark Clouds: CO2 Formation on Cold Amorphous Solid Water Journal Article

In: J. Phys. Chem. Lett., vol. 12, pp. 6781, 2021.

Links | BibTeX | Tags: Astrochemistry, CO

39.

M. Upadhyay; M. Meuwly

Energy Redistribution following CO2 Formation on Cold Amorphous Solid Water Journal Article

In: Frontiers Chem., vol. 9, pp. 827085, 2021.

BibTeX | Tags: CO2, Energy Redistribution, Solid-Water

40.

J. Arnold; J. C. San Vicente Veliz; D. Koner; N. Singh; R. J. Bemish; M. Meuwly

Machine Learning Product State Distributions from Initial Reactant States for a Reactive Atom-Diatom Collision System Journal Article

In: J. Chem. Phys., vol. 156, pp. 034301, 2021.

BibTeX | Tags: machine learning, Reactive Atom-Diatom Collision System

41.

M. Upadhyay; M. Meuwly

Thermal and Vibrationally Activated Decomposition of the syn-CHCHOO Criegee Intermediate Journal Article

In: ACS Earth Space Chem., vol. 5, pp. 3396, 2021.

BibTeX | Tags: Criegee Intermediate, Decomposition Activation, syn-CHCHOO

42.

P. Mondal; P. A. Cazade; A. K. Das; T. Bereau; M. Meuwly

Multipolar Force Fields for Amide-I Spectroscopy from Conformational Dynamics of the Alanine-Trimer Journal Article

In: J. Phys. Chem. B, vol. 125, pp. 10928, 2021.

BibTeX | Tags: Alanine-Trimer, Conformational Dynamics, Multipolar Force Fields, Spectroscopy

43.

M. Meuwly; M. Karplus

The Functional Role of the Hemoglobin-Water Interface Journal Article

In: Molecular Aspects of Medicine, pp. 101042, 2021.

BibTeX | Tags: H2O, Hemoglobin, Interface

44.

H. T. Turan; M. Meuwly

Spectroscopy, Dynamics and Hydration of S-Nitrosylated Myoglobin Journal Article

In: J. Phys. Chem. B, vol. 125, pp. 4262, 2021.

BibTeX | Tags: Dynamics, Hydration, Myoglobin, Spectroscopy

45.

J. C. San Vicente Veliz; D. Koner; M. Schwilk; R. J. Bemish; M. Meuwly

The C (3 P)+ O 2 (3 Σ g−)→ CO 2↔ CO (1 Σ+)+ O (1 D)/O (3 P) Reaction: Thermal and Vibrational Relaxation Rates from 15 K to 20000 K Journal Article

In: PCCP, vol. 23, pp. 11251, 2021.

Links | BibTeX | Tags: thermal rates, vibrational relaxation

46.

S. M. Salehi; M. Meuwly

Site-Selective Dynamics of Azidolysozyme Journal Article

In: J. Chem. Phys., vol. 154, no. 16, pp. 165101, 2021.

BibTeX | Tags: Azidolysosyme, Structural Dynamics

47.

S. Käser; E. D. Boittier; M. Upadhyay; M. Meuwly

Transfer Learning to CCSD (T): Accurate Anharmonic Frequencies from Machine Learning Models Journal Article

In: J. Chem. Theo. Comput., 2021.

BibTeX | Tags: CCSD(T), machine learning

2020

48.

S. Käser; D. Koner; A. S. Christensen; O. A. von Lilienfeld; M. Meuwly

ML Models of Vibrating H2CO: Comparing Reproducing Kernels, FCHL and PhysNet Journal Article

In: J. Phys. Chem. A, vol. 124, pp. 8853–8865, 2020.

BibTeX | Tags: Computational Vibrational Spectroscopy, machine learning, physnet

49.

U. Rivero; H. T. Turan; M. Meuwly; S. Willitsch

Reactive Atomistic Simulations of Diels-Alder-Type Reactions: Conformational and Dynamic Effects in the Polar Cycloaddition of 2,3-Dibromobutadiene Radical Ions with Maleic Anhydride Journal Article

In: Mol. Phys., vol. 119, pp. e182852, 2020.

BibTeX | Tags: Atomistic Simulations, diels-alder

50.

O. T. Unke; D. Koner; S. Patra; S. Käser; M. Meuwly

High-Dimensional Potential Energy Surfaces for Molecular Simulations Journal Article

In: Mach. Learn. Sci. Tech., vol. 1, pp. 013001, 2020.

BibTeX | Tags: machine learning, Molecular Simulation, Molecular Simulations, potential energy surfaces

290 entries « 1 of 6 »